Classification and phylogeny of Amaryllidaceae, the modern synthesis and the road ahead: a review

Authors

DOI:

https://doi.org/10.31055/1851.2372.v58.n3.40046

Keywords:

DNA sequences, geophytes, monocots, systematics, taxonomy

Abstract

The classification and phylogenetic history of the Amaryllidaceae is reviewed since the dawn of molecular systematics in the 1990’s. The family is now recognized as comprising three subfamilies: Agapanthoideae, Allioideae, and Amaryllidoideae, of which the latter is the largest. The family likely had a Gondwanaland origin in what is now Africa. Agapanthoideae is monotypic, endemic to South Africa, and the first branch in the family tree of life; Allioidieae is sister to Amaryllidoideae. Four tribes are recognized in Allioideae: Allieae (monotypic, with nearly 1000 species of Allium across the Northern Hemisphere), Gilliesieae (5–7 genera in southern South America), Leucocoryneae (six genera mostly in southern South America), and Tulbaghieae (monotypic, with ca. 30 species endemic to South Africa). Amaryllidoideae is cosmopolitan, but mostly pantropical, consisting of 13 tribes. Centers of diversity occur in South Africa, South America and the Mediterranean region. The American clade is sister to the Eurasian clade (tribes Galantheae, Lycorideae, Narcisseae and Pancratieae) of the subfamily. The American Amaryllidoideae resolves as two monophyletic groups, 1) the hippeastroid clade (tribes Griffineae and Hippeastreae) and 2) the Andean tetraploid clade (tribes Clinantheae, Eucharideae, Eustephieae, and Hymenocallideae). Molecular analyses are reviewed for each main clade of the family, along with the resultant taxonomic changes. Directions for future studies are briefly discussed.

References

APG II. 2003. An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG II. Bot. J. Linn. Soc. 141: 399-436.

https://doi.org/10.1046/j.1095-8339.2003.t01-1-00158.x

APG III. 2009. An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III. Bot. J. Linn. Soc. 161:105-121.

https://doi.org/10.1111/j.1095-8339.2009.00996.x

BAEZA, C. & J. MACAYA. 2020. Karyotypic analysis of Famatina andina (Phil.) Ravenna (Amaryllidaceae): first record of South American Hippeastreae with secondary centromeric constrictions. Gayana Bot. 77: 59-61.

BAEZA, C. M., C. MARIANGEL, E. RUIZ & M. NEGRITTO. 2009a. El cariotipo fundamental en Rhodolirium speciosum (Herb.) Ravenna y R. andicola (Poepp.) Ravenna (Amaryllidaceae). Gayana Bot. 66: 99-102.

BAEZA, C. M., P. NOVOA, E. RUIZ & M. A. 2009b The fundamental karyotype in Traubia modesta (Phil.) Ravenna (Amaryllidaceae). Gayana Bot. 66: 297-300.

BAEZA, C., E. RUIZ, F. ALMENDRAS & P. PENAILILLO. 2012. Comparative karyotype studies in species of Miltinea Ravenna, Phycella Lindl. and Rhodophiala C. Presl (Amaryllidaceae) from Chile. Rev. Facul. Ciencias Agrarias 44: 193-205.

BAEZA, C.M., N. GARCÍA, F. HERRERA, E. RUIZ & M. ROSAS. 2017. Caracterización cromosómica de Rhodolirium laetum (Phil.) Ravenna (Amaryllidaceae) a través de cariotipificación e hibridación in-situ de ADN ribosómico. Gayana Bot. 74: 240-244.

BAKER, W.J., P. BAILEY, V. BARBER, A. BARKER, … & F. FOREST F. 2022. A comprehensive phylogenomic platform for exploring the Angiosperm Tree of Life. Syst. Biol. 71: 301-319. https://doi.org/10.1093/sysbio/syab035

BARRETT, S. C. H. & L. D. HARDER. 2005. The evolution of polymorphic sexual systems in daffodils (Narcissus). New Phytol. 165: 45-53. https://doi.org/10.1111/j.1469-8137.2004.01183.x

BAY-SMIDT, M. G. K., A. K. JÄGER, K. KRYDSFELDT, A.W. MEEROW, … & N. RØNSTED. 2011. Phylogenetic selection of target species in Amaryllidaceae tribe Haemantheae for acetylcholinesterase inhibition and affinity to the serotonin reuptake transport protein. South Afr. J. Bot. 77: 175-183. https://doi.org/10.1016/j.sajb.2010.07.016

BEAUMONT, M. A. 2010. Approximate Bayesian computation in evolution and ecology. Ann. Rev. Ecol. Evol. Syst. 41: 379-406. https://doi.org/10.1146/annurev-ecolsys-102209-144621

BLANCHARD, J. W. 1990. Narcissus: a guide to wild daffodils. Alpine Garden Society, Surrey.

BLATTNER, F. R., & N. FRIESEN. 2006. Relationship between Chinese chive (Allium tuberosum) and its putative progenitor A. ramosum as assessed by random amplified polymorphic DNA (RAPD). In: ZEDER, M. A. et al. (eds.), Documenting domestication: new genetic and archaeological paradigms, pp. 134-142. California University Press, Berkeley.

CAMPOS-ROCHA A., J. SEMIR, M. PEIXOTO, J. H. A. DUTILH. 2018. Griffinia meerowiana, a remarkable new species of Amaryllidaceae from Espírito Santo state, Brazil. Phytotaxa 344: 228-238. https://doi.org/10.11646/phytotaxa.344.3.3

CAMPOS-ROCHA A., A. W. MEEROW & D. A. LIMA.2019a. The rediscovery of Griffinia alba (Amaryllidaceae), a poorly known and endangered species. Brittonia 71: 134-143. https://doi.org/10.1007/s12228-018-9561-1

CAMPOS-ROCHA A, A. W. MEEROW, E. F. M. LOPES, J. SEMIR, J. L. S. MAYER & J. H. A. DUTILH. 2019b. New and reassessed species of Griffinia (Amaryllidaceae) from the Brazilian Atlantic Forest. Syst. Bot. 44: 310-318. https://doi.org/10.1600/036364419X15562052252199

CAMPOS-ROCHA A, A. DA SILVA MEDEIROS, A. W. MEEROW, P. ANDRE SANZ-VEGA & J. H. A. DUTILH. 2022a.A remarkable new species of Hippeastrum (Amaryllidaceae) from the Serra da Mantiqueira, Southeastern Brazil. Phytotaxa 571: 197-208.

https://doi.org/10.11646/phytotaxa.571.2.6

CAMPOS-ROCHA A., A. W. MEEROW, R. M. MACHADO, J. L. MAYER, ... & J. H. DUTILH. 2022b. Out of the mud: two new species of Hippeastrum (Amaryllidaceae) from the Doce and Jequitinhonha River basins, Brazil. Pl. Syst. Evol. 308: 1-25.

https://doi.org/10.1007/s00606-022-01805-3

CHASE, M. W., M. R. DUVALL, H. G. HILLS, J. G. CONRAN, … & S. HOOT. 1995a. Molecular phylogenetics of Lilianae. In: RUDALL, P. J. et al. (eds.), Monocotyledons: systematics and evolution, vol. 1, pp. 109-137. Royal Botanic Gardens, Kew.

CHASE, M. W., D. W. STEVENSON, P. WILKIN & P. J. RUDALL. 1995b. Monocot systematics: a combined analysis. In: RUDALL, P. J. et al. (eds.), Monocotyledons: systematics and evolution, vol. 1, pp. 685-730. Royal Botanic Gardens, Kew.

CHASE, M. W., M. F. FAY, D. S. DEVEY, O. MAURIN, … & H. S. RAI. 2006. Multi-gene analyses of monocot relationships: a summary. In: COLUMBUS, J. T. et al. (eds.), Monocots: comparative biology and evolution (vol. 1, excluding Poales), pp. 63-75. Rancho Santa Ana Botanic Garden, Claremont.

CHASE, M. W., J. L. REVEAL & M. F. FAY. 2009. A subfamilial classification for the expanded asparagalean families Amaryllidaceae, Asparagaceae and Xanthorrhoeaceae. Bot. J. Linn. Soc. 161:132-136. https://doi.org/10.1111/j.1095-8339.2009.00999.x

CHENG R-Y, D-F XIE, X-Y ZHANG, X FU, X-J HE & S-D ZHOU. 2022. Comparative plastome analysis of three Amaryllidaceae subfamilies: insights into variation of genome characteristics, phylogeny, and adaptive evolution. BioMed Res. Int. 3909596: 1-20. https://doi.org/10.1155/2022/3909596

COSTA L., H. JIMENEZ, R. CARVALHO, J. CARVALHO-SOBRINHO, ... & G. SOUZA. 2020. Divide to conquer: evolutionary history of Allioideae tribes (Amaryllidaceae) is linked to distinct trends of karyotype evolution. Front. Pl. Sci. 11: 320.

https://doi.org/10.3389/fpls.2020.00320

CRONN, R., B. J. KNAUS, A. LISTON, P.J. MAUGHAN, … & J. UDALL. 2012. Targeted enrichment strategies for next-generation plant biology. Am. J. Bot. 99: 291-311.

https://doi.org/10.3732/ajb.1100356

DAHLGREN, R. M. T., H. T. CLIFFORD & P. F. YEO. 1985. The families of the monocotyledons: structure, evolution and taxonomy. Springer, Berlin.

DAVIS, A. P. 1999. The genus Galanthus: a botanical magazine monograph. Timber Press Portland, Oregon.

DAVIS, A. P. 2001. The genus Galanthus - snowdrops in the wild. In A monograph of cultivated Galanthus. In: BISHOP, M. et al. (eds.), pp. 9-63. Griffin Press, Cheltenham.

DENNEHY, Z, J. BILSBORROW, A. CULHAM, J. DAVID & K. KÖNYVES. 2021. The complete plastome of the South African species, Amaryllis belladonna L. (Amaryllidaceae). Mitochondrial DNA Part B 6: 3393-3395. https://doi.org/10.1080/23802359.2021.1997121

DUBOUZET, J. G., K. SHINODA & N. MURATA. 1997. Phylogeny of Allium L. subgenus Rhizirideum (G. Don ex Koch) Wendelbo according to dot blot hybridization with randomly amplified DNA probes. Theor. Appl. Genet. 95: 1223-1228.

https://doi.org/10.1007/s001220050685

DUBOUZET, J. G. & K. SHINODA. 1998. Phylogeny of Allium L. subgenus Melanocrommyum (Webb et Berth.) Rouy based on DNA sequence analysis of the internal transcribed spacer region of nrDNA. Theor. Appl. Genet. 97:541-549. https://doi.org/10.1007/s001220050929

DYER, R. A. 1939 (published 1940). Description, classification and phylogeny. A review of the genus Cyrtanthus. Herbertia 6: 65-103.

ESCOBAR, I., E. RUIZ-PONCE, P. J. RUDALL, M. F. FAY, … & C. M. BAEZA.2020. Phylogenetic relationships based on nuclear and plastid DNA sequences reveal recent diversification and discordant patterns of morphological evolution of the Chilean genera of Gilliesieae (Amaryllidaceae: Allioideae). Bot. J. Linn. Soc. 97: 541-549.

https://doi.org/10.1007/s001220050929

FAY, M. F. & M. W. CHASE. 1996. Resurrection of Themidaceae for the Brodiaea alliance, and recircumscription of Alliaceae, Amaryllidaceae and Agapanthoideae. Taxon 45:441-451. https://doi.org/10.2307/1224136

FAY, M. F., P. J. RUDALL, S. SULLIVAN, K. L. STOBART, … & M. W. CHASE. 2000. Phylogenetic studies of Asparagales based on four plastid DNA loci. In: WILSON, K. L. & D. A. MORRISON (eds.), Monocots-systematics and evolution, vol. 1, pp. 360-371. CSIRO Publishing, Collingswood.

FAY, M. F., P. J. RUDALL & M. W. CHASE. 2006. Molecular studies of subfamily Gilliesioiodeae (Alliaceae). In: COLUMBUS, J. T. et al. (eds.), Monocots: comparative biology and evolution (vol. 1, excluding Poales), pp. 365-375. Rancho Santa Ana Botanic Garden, Claremont. https://doi.org/10.5642/aliso.20062201.30

FELSENSTEIN, J. 2004. Inferring phylogenies. Sinaeuer Associates, Sutherland.

FERNANDES A. 1975. L’évolution chez le genre Narcissus L. Anales Inst. Bot. A. J. Cavanilles 32: 843-872.

FERNANDES, A. 1967. Contribution à la connaissance de la biosystématique de quelques espèces du genre Narcissus L. Portugaliae Acta Biol., ser. B. Sistem., Ecol., Biog. Paleontol. 9: 1-44.

FERNANDES, A. 1968a. Keys to the identification of native and naturalizaed taxa of the genus Narcissus L. Daffodil Tulip Year Book 1968: 37-66.

FERNANDES, A. 1968b. Improvements in the classification of the genus Narcissus L. Pl. Life 24: 51-57.

FRIESEN, N. 2022. Introduction to edible alliums: evolution, classification and domestication. In Rabinowitch, H. & B. Thomas (eds.), Edible alliums: botany, production and uses, pp. 1-19. CABI, GB. https://doi.org/10.1079/9781789249996.0001

FRIESEN, N. & M. KLAAS. 1998. Origin of some minor vegetatively propagated Allium crops studied with RAPD and GISH. Genet. Res. Crop Evol. 45: 511-523.

https://doi.org/10.1023/A:1008647700251

FRIESEN, N., R. M. FRITSCH, S. POLLNER & F. R. BLATTNER. 2000. Molecular and morphological evidence for an origin of the aberrant genus Milula within Himalayan species of Allium (Alliaceae). Mol. Phylogenet. Evol. 17: 209-218. https://doi.org/10.1006/mpev.2000.0844

FRIESEN, N., R. M. FRITSCH & F. R. BLATTNER. 2006. Phylogeny and new intrageneric classification of Allium (Alliaceae) based on nuclear ribosomal DNA ITS sequences. In: COLUMBUS, J. T. et al. (eds.), Monocots: comparative biology and evolution (vol. 1, excluding Poales), pp. 372-395. Rancho Santa Ana Botanic Garden, Claremont.

FRIESEN, N., S. POLLNER, K. BACHMANN & F. R. BLATTNER. 1999. RAPDs and noncoding chloroplast DNA reveal a single origin of the cultivated Allium fistulosum from A. altaicum (Alliaceae). Am. J. Bot. 86: 554-562. https://doi.org/10.2307/2656817

FRITSCH, R. M. 2001. Taxonomy of the genus Allium: contribution from IPK Gatersleben. Herbertia 56: 19-50.

FRITSCH, R. M. & N. FRIESEN. 2002. Evolution, domestication, and taxonomy. In: RABINOWITCH, H. D. & L. CURRAH (eds.), Allium crop science: recent advances, pp. 5-30. CABI Publishing, Wallingford.

FRITSCH, R. M., F. R. BLATTNER & M. GURUSHIDZE. 2010. New classification of Allium L. subg. Melanocrommyum (Webb & Berthel) Rouy (Alliaceae) based on molecular and morphological characters. Phyton 49: 145-220.

GAGE, E., P. WILKIN, M. W. CHASE & J. HAWKINS. 2011. Phylogenetic systematics of Sternbergia (Amaryllidaceae) based on plastid and ITS sequence data. Bot. J. Linn. Soc. 166: 149-162. https://doi.org/10.1111/j.1095-8339.2011.01138.x

GARCÍA, N., C. CUEVAS, J. E. SEPÚLVEDA, A. CÁDIZ-VÉLIZ & M. J. ROMÁN. 2022a. Two new species of Miersia and their phylogenetic placements alongside the recently described M. putaendensis (Gilliesieae, Allioideae, Amaryllidaceae). PhytoKeys 211: 107-124.

https://doi.org/10.3897/phytokeys.211.87842

GARCÍA N., A. B. SASSONE, R. PINTO & M. J. ROMÁN. 2022b. Atacamallium minutiflorum (Amaryllidaceae, Allioideae), new genus and species from the coastal desert of northern Chile. Taxon 71: 552–562. https://doi.org/10.1002/tax.12684

GARCÍA, N. & A. W. MEEROW. 2020. Corrigendum to: García & al., Generic classification of Amaryllidaceae tribe Hippeastreae [in Taxon 68: 481–498. 2019]. Taxon 69: 208-209. https://doi.org/10.1002/tax.12208

GARCÍA, N., A. W. MEEROW, S. ARROYO-LEUENBERGER, R. S. OLIVEIRA, … & W.S. JUDD. 2019. Generic classification of Amaryllidaceae tribe Hippeastreae. Taxon 68: 481-498. https://doi.org/10.1002/tax.12062

GARCÍA N., R..A FOLK, A.W. MEEROW, S. CHAMALA, … & P.A. SOLTIS. 2017. Deep reticulation and incomplete lineage sorting obscure the diploid phylogeny of rain-lilies and allies (Amaryllidaceae tribe Hippeastreae). Mol. Phylogenet. Evol. 111: 231-247.

https://doi.org/10.1002/tax.12062

GARCÍA, N., A. W. MEEROW, D. E. SOLTIS & P. S. SOLTIS. 2014. Testing deep reticulate evolution in Amaryllidaceae tribe Hippeastreae (Asparagales) with ITS and chloroplast sequence data. Syst. Bot. 39: 75-89. https://doi.org 10.1600/036364414X678099

GOODMAN, C. S. & B. C. COUGHLIN, B. C. 2000. Special feature: The evolution of evo-devo biology. Proc. Nat. Acad. Sci. USA 97: 4424-4456. https://doi.org/10.1073/pnas.97.9.4424

GRAHAM, S. W. & S. C. H. BARRETT. 2004. Phylogenetic reconstruction of the evolution of stylar polymorphisms in Narcissus (Amaryllidaceae). Am. J. Bot. 91: 1007-1021.

https://doi.org/10.3732/ajb.91.7.1007

GRAHAM, S. W., J. M. ZGURSKI, M. A. MCPHERSON, D, M. CHERNIAWSKY, … & H. S. RAI. 2006. Robust inference of monocot deep phylogeny using an expanded multigene plastid data set. In: COLUMBUS, J. T. et al. (eds.), Monocots: comparative biology and evolution (vol. 1, excluding Poales), pp. 3-21. Rancho Santa Ana Botanic Garden, Claremont.

GURUSHIDZE, M., R. M. FRITSCH & F. R. BLATTNER. 2008. Phylogenetic analysis of Allium subgen. Melanocrommyum infers cryptic species and demands a new sectional classification. Mol. Phylogenet. Evol. 49: 997-1007. https://doi.org/10.1016/j.ympev.2008.09.003

GURUSHIDZE, M., R. M. FRITSCH & F. R. BLATTNER. 2010. Species level phylogeny of Allium subgenus Melanocrommyum-incomplete lineage sorting, hybridization and trnF gene duplication. Taxon 59: 829-840. https://doi.org/10.1002/tax.593012

GURUSHIDZE, M., S. MASHAYEKHI, F. R. BLATTNER, N. FRIESEN & R. M. FRITSCH. 2007. Phylogenetic relationships of wild and cultivated species of Allium section Cepa inferred by nuclear rDNA ITS sequence analysis. Plant Syst. Evol. 269: 259-269.

https://doi.org/10.1007/s00606-007-0596-0

HE, X. J., S. GE, J. M. XU & D. Y. HONG. 2000. Phylogeny of Chinese Allium (Liliaceae) using PCR-RFLP analysis. Science in China (series C) 43:454-463.

HE, M., C. QU, O. GAO, X. HU & X. HONG. 2015. Biological and pharmacological activities of amaryllidaceae alkaloids. RSC Adv. 5: 16562. https://doi.org/10.1039/C4RA14666B

HENNIG, W. 1966. Phylogentic systematics. University of Illinois Press, Urbana.

HERDEN T., P. HANELT & N. FRIESEN. 2016. Phylogeny of Allium L. subgenus Anguinum (G. Don. ex W.D.J. Koch) N. Friesen (Amaryllidaceae). Mol. Phylogenet. Evol. 95:79-93. https://doi.org/10.1016/j.ympev.2015.11.004

HIRSCHEGGER, P., J. JAKŠE, P. TRONTELJ & B. BOHANEC. 2010. Origins of Allium ampeloprasum horticultural groups and a molecular phylogeny of the section Allium (Allium: Alliaceae). Mol. Phylogenet. Evol. 54:488-497. https://doi.org/10.1016/j.ympev.2009.08.030

HUELSENBECK, J. P. & K. A. Crandall. 1997. Phylogeny estimation and hypothesis testing using maximum likelihood. Ann. Rev. Ecol. Syst. 28:437-466.

ISING, G. 1970. Evolution of karyotypes in Cyrtanthus. Hereditas 65:1-28. https://doi.org/10.1111/j.1601-5223.1970.tb02305.x

ITO, M., A. KAWAMOTO, Y. KITA, T. YUKAWA & S. KURITA. 1999. Phylogenetic relationships of Amaryllidaceae based on matK sequence data. J. Plant Res. 112:207-216.

https://doi.org/10.1007/PL00013874

JANSSEN, T. & K. BREMER. 2004. The age of major monocot groups inferred from 800+ rbcL sequences. Bot. J. Linn. Soc. 146: 385-398. https://doi.org/10.1111/j.1095-8339.2004.00345.x

JIMENEZ, H. J., A. D. F. DA SILVA, L. S. S. MARTINS, R. DE CARVALHO & R. M. DE MORAES FILHO. 2020. Comparative genomics plastomes of the Amaryllidaceae family species. Scientia Plena 16. https://doi.org/10.14808/sci.plena.2020.060202

JUDD, W. S., C. S. CAMPBELL, E. A. KELLOGG, P. F. STEVENS & D M. J. DONOGHUE. 2015. Plant systematics: a phylogenetic approach, 4th ed. Sinauer Associates, Sutherland.

KITCHING, I. J., P. FOREY, C. HUMPHRIES & D. WILLIAMS. 1998. Cladistics: the theory and practice of parsimony analysis (No. 11). Oxford University Press, Oxford.

KÖNYVES. K., J. DAVID & A. CULHAM. 2019. Jumping through the hoops: the challenges of daffodil (Narcissus) classification. Bot. J. Linn. Soc. 190: 389-404.

https://doi.org/10.1093/botlinnean/boz032

KOSHIMIZU, T. 1930. Carpobiological studies of Crinum asiaticum L. var. japonicum Bak. Mem. Coll. Sci., Kyoto Imp. Univ., Ser. B., Biology 5:183-227.

KWEMBEYA, E. G., C. S. BJORÅ, B. STEDJE & I. NORDAL. 2007. Phylogenetic relationships in the genus Crinum (Amaryllidaceae) with emphasis on tropical African species: evidence from trnL-F and nuclear ITS DNA sequence data. Taxon 56: 801-810. https://doi.org/10.2307/25065862

LARA RICO, R.F., R. VÁSQUEZ CHÁVEZ & M. A. BURGOS. 2021. The genus Hippeastrum (Amaryllidaceae) in Bolivia. Pacific Bulb Society, Leonia.

LARSEN, M. M., A. ADSERSEN, A. P. DAVIS, M. D. LLEDÓ, A. K. JÄGER & N. RØNSTED. 2010. Using a phylogenetic approach to selection of target plants in drug discovery of acetylcholinesterase inhibiting alkaloids in Amaryllidaceae tribe Galantheae. Biochem. Syst. Ecol. 38: 1026-1034. https://doi.org/10.1016/j.bse.2010.10.005

LEMMON, A. R., S. A. EMME & E. M LEMMON. 2012. Anchored hybrid enrichment for massively high-throughput phylogenomics. Syst. Biol. 61: 727-744. http://doi.org/ 10.1093/sysbio/sys049.

LEMMON, E. M. & A. R. LEMMON. 2013. High-throughput genomic data in systematics and phylogenetics. Ann. Rev. Ecol. Evol. Syst. 44: 99-121.

https://doi.org/10.1146/annurev-ecolsys-110512-135822

LI, M.J., J.B.TAN, D.F. XIE, D.Q. HUANG, … & X.J. HE. 2016a. Revisiting the evolutionary events in Allium subgenus Cyathophora (Amaryllidaceae): insights into the effect of the Hengduan Mountains Region (HMR) uplift and quaternary climatic fluctuations to the environmental changes in the Qinghai-Tibet Plateau. Mol. Phylogenet. Evol. 94: 802-813.

https://doi.org/10.1016/j.ympev.2015.10.002

LI, Q.-Q., S. D. ZHOU, D. Q. HUANG, X. J. HE & X. Q. WEI. 2016b. Molecular phylogeny, divergence time estimates and historical biogeography within one of the world’s largest monocot genera. AoB Plants 8: plw041. https://doi.org/10.1093/aobpla/plw041.

LI, Q.-Q., S.-D. ZHOU, X.-J. HE, Y. YU, Y.-C. ZHANG & X.-Q. WEI. 2010. Phylogeny and biogeography of Allium (Amaryllidaceae: Allieae) based on nuclear ribosomal internal transcribed spacer and chloroplast rps16 sequences, focusing on the inclusion of species endemic to China. Ann. Bot. 106: 709-733. https://doi.org/10.1093/aob/mcq177

LLEDÓ, M. D., A. P. DAVIS, M. B. CRESPO, M. W. CHASE & M. F. FAY. 2004. Phylogenetic analysis of Leucojum and Galanthus (Amaryllidaceae) based on plastid matK and nuclear ribosomal spacer (ITS) DNA sequences and morphology. Plant Syst. Evol. 246:223-243.

https://doi.org/10.1007/s00606-004-0152-0

LOU, Y.-L., D.-K. MA, Z.-T. JIN, H. WANG, ... & B.-B. LIU. 2022. Phylogenomic and morphological evidence reveal a new species of spider lily, Lycoris longifolia (Amaryllidaceae) from China. Phytokeys 210: 79-92. https://doi.org/10.3897/phytokeys.210.90391

MARQUES, I. C. 2010. Evolutionary outcomes of natural hybridization in Narcissus (Amaryllidaceae): the case of N. × perezlarae s.l. Doctoral dissertation. University of Lisbon, Portugal.

MARQUES, I., J. FUERTES AGUILAR, M. A. MARTINS-LOUÇAO, F. MOHARREK & H. N. FELINER. 2017. A three‐genome five‐gene comprehensive phylogeny of the bulbous genus Narcissus (Amaryllidaceae) challenges current classifications and reveals multiple hybridization events. Taxon 66: 832-854. https://doi.org/10.12705/664.3

MATHEW, B. 1983. A review of the genus Sternbergia. The Plantsman 5: 1-16.

MATHEW, B. 2002. Classification of the genus Narcissus. In: HANKS, G. R. (ed.), Narcissus and daffodil, pp. 30-52. Taylor and Francis, London.

MEEROW, A. W. 2009. Tilting at windmills: 20 years of Hippeastrum breeding. Israel J. Pl. Sci. 57: 303-313. http://doi.org/10.1560/IJPS.57.4.303

MEEROW, A. W. 2010. Convergence or reticulation? Mosaic evolution in the canalized American Amaryllidaceae. In: SEBERG, O. et al. (eds.), Diversity, phylogeny and evolution in the monocotyledons, pp. 145-168. Aarhus University Press, Aarhus.

MEEROW, A. W. & J. R. CLAYTON. 2004. Generic relationships among the baccate-fruited Amaryllidaceae (tribe Haemantheae) inferred from plastid and nuclear non-coding DNA sequences. Plant Syst. Evol. 244:141-155. https://doi.org/10.1007/s00606-003-0085-z

MEEROW, A. W. & D. A. SNIJMAN. 1998. Amaryllidaceae. In: KUBITZKI, K. (ed.), The families and genera of vascular plants III. Flowering plants, monocotyledons: Lilianae (except Orchidaceae), pp. 83-110. Springer, Berlin.

MEEROW, A. W. & D. A. SNIJMAN. 2001. Phylogeny of Amaryllidaceae tribe Amaryllideae based on nrDNA ITS sequences and morphology. Am. J. Bot. 88: 2321-2330.

https://doi.org/10.2307/3558392

MEEROW, A. W. & D. A. SNIJMAN. 2006. The never-ending story: multigene approaches to the phylogeny of Amaryllidaceae, and assessing its familial limits. In: COLUMBUS, J. T. et al. (eds.), Monocots: comparative biology and evolution, vol. 1, pp. 365-375. Rancho Santa Ana Botanic Garden, Claremont. https://doi.org/10.5642/aliso.20062201.29

MEEROW, A. W., C. L. GUY, Q-B. LI & S-Y. YANG. 2000. Phylogeny of the American Amaryllidaceae based on nrDNA ITS sequences. Syst. Bot. 25: 708-726. https://doi.org/10.2307/2666729

MEEROW, A. W., C. L. GUY, Q-B. LI & J. R. CLAYTON. 2002. Phylogeny of the tribe Hymenocallideae (Amaryllidaceae) based on morphology and molecular characters. Ann. Missouri Bot. Gard. 89: 400-413. https://doi.org/10.2307/3298600

MEEROW, A. W., E. M. GARDNER & K. NAKAMURA. 2023. Corrigendum: Phylogenomics of the Andean tetraploid clade of the American Amaryllidaceae (subfamily Amaryllidoideae): Unlocking a polyploid generic radiation abetted by continental geodynamics. Front. Plant Sci. 14. https://doi.org/10.3389/fpls.2023.1151864

MEEROW, A.W., E. M. GARDNER & K. NAKAMURA. 2020, Phylogenomics of the Andean tetraploid clade of the American Amaryllidaceae (subfamily Amaryllidoideae): Unlocking a polyploid generic radiation abetted by continental geodynamics. Front. Plant Sci. 11: 582422. https://doi.org/10.3389/fpls.2020.582422

MEEROW, A. W., D. J. LEHMILLER & J. R. CLAYTON. 2003. Phylogeny and biogeography of Crinum L. (Amaryllidaceae) inferred from nuclear and limited plastid non-coding DNA sequences. Bot. J. Linn. Soc. 141: 349-363. https://doi.org/10.1046/j.1095-8339.2003.00142.x

MEEROW, A. W., J. VAN SCHEEPEN & J. H. A. DUTILH. 1997. Transfers from Amaryllis to Hippeastrum. (Amaryllidaceae). Taxon 46: 15-19. https://doi.org/10.2307/1224287

MEEROW, A. W., J. L. REVEAL, D. A. SNIJMAN & J. H. DUTILH. 2007. (1793) Proposal to conserve the name Amaryllidaceae against Alliaceae, a “superconservation” proposal. Taxon 56:1299-1300.

MEEROW, A. W., J. FRANCISCO-ORTEGA, D. N. KUHN & R. J. SCHNELL. 2006. Phylogenetic relationships and biogeography within the Eurasian clade of Amaryllidaceae based on plastid ndhF and nrDNA ITS sequences: lineage sorting in a reticulate area? Syst. Bot. 31:42-60. https://doi.org/10.1600/036364406775971787

MEEROW, A. W., M. FAY, M. W. CHASE, C. L. GUY, … & S-L. YANG. 2000. Phylogeny of the Amaryllidaceae: molecules and morphology. In: WILSON, K. L. & D. A. MORRISON (eds.), Monocots: systematics and evolution, pp. 368-382. CSIRO Publishing, Collingwood.

MEEROW, A. W., M. F. FAY, C. L. GUY, Q.-B. LI, … & M. W. CHASE. 1999. Systematics of Amaryllidaceae based on cladistic analysis of plastid rbcL and trnL-F sequence data. Am. J. Bot. 86: 1325-1345. https://doi.org/10.2307/2656780

MES, T. H. M., N. FRIESEN, R. M. FRITSCH, M. KLAAS & K. BACHMANN. 1997. Criteria for sampling in Allium based on chloroplast DNA PCR-RFLPs. Syst. Bot. 22: 701-712. https://doi.org/10.2307/2419436

MES, T. H. M., R. M. FRITSCH, S. POLLNER & K. BACHMANN. 1999. Evolution of the chloroplast genome and polymorphic ITS regions in Allium subgenus Melanocrommyum. Genome 42: 237-247. https://doi.org/10.1139/g98-123

MÜLLER-DOBLIES, D. & U. MÜLLER-DOBLIES. 1978a. Zum Bauplan von Ungernia, der einzigen endemischen Amaryllidaceen - Gattung Zentralasiens. Bot. Jahrb. 99: 249-263.

MÜLLER-DOBLIES, D. & U. MÜLLER-DOBLIES. 1978b. Studies on tribal systematics of Amaryllidoideae 1. The systematic position of Lapiedra Lag. Lagascalia 8: 13-23.

NGUYEN, N. H., H. E. DRISCOLL & C. D. SPECHT. 2008. A molecular phylogeny of the wild onions (Allium; Alliaceae) with a focus on the western North American center of diversity. Mol. Phylogenet. Evol. 47: 1157-1172. https://doi.org/10.1016/j.ympev.2007.12.006

OLIVEIRA, R. 2012. O gênero Hippeastrum Herb.(Amaryllidaceae) no Brasil: evidência de evolução reticulada e análise de caracteres florais. PhD Thesis. Universidade Estadual de Campinas, Brazil.

OLIVEIRA. R. S., J. SEMIR & J. H. A. DUTILH. 2013. Four new endemic species of Hippeastrum (Amaryllidaceae) from Serra da Canastra, Minas Gerais State, Brazil. Phytotaxa 145: 38-46. https://doi.org/10.11646/phytotaxa.145.1.4

OLIVEIRA R. S., J. D. URDAMPILLETA & J. H. DUTILH. 2017. A new Hippeastrum (Amaryllidaceae) species from Brazil. Phytotaxa 307: 147-152. https://doi.org/10.11646/phytotaxa.307.2.6

PELLICER, J., O. HIDALGO, J. WALKER, M. W. CHASE, … & M. F. FAY. 2017. Genome size dynamics in tribe Gilliesieae (Amaryllidaceae, subfamily Allioideae) in the context of polyploidy and unusual incidence of Robertsonian translocations. Bot. J. Linn. Soc. 184: 16-31. https://doi.org/10.1093/botlinnean/box016

PÉREZ-BARRALES, R., P. VARGAS & J. ARROYO. 2003. Convergent evolution of flower polymorphism in Narcissus L. (Amaryllidaceae). New Phytol. 161: 235-252.

https://doi.org/10.1046/j.1469-8137.2003.00955.x

PIGG, K. B., F. A. BRYAN & M. L. DEVORE. 2018. Paleoallium billgenseli gen. et sp. nov.: Fossil Monocot Remains from the Latest Early Eocene Republic Flora, Northeastern Washington State, USA. Int. J. Plant Sci. 179: 477-486. https://doi.org/10.1086/697898

QIN, W. H., W. Q. MENG, D. ZHANG, Y. WANG, … & K. LIU. 2021. A new Amaryllidaceae genus, Shoubiaonia, from Yunnan Province, China. Nord. J. Bot. 39: e02703.

https://doi.org/10.1111/njb.02703

RAHN, K. 1998. Alliaceae, Themidaceae. In: KUBITZKI, K. (ed.), The families and genera of vascular plants III. Flowering plants, monocotyledons: Lilianae (except Orchidaceae), pp. 70-78. Springer, Berlin.

RAVEN, P. H. & D. I. AXELROD. 1974. Angiosperm biogeography and past continental movements. Ann. Missouri Bot. Gard. 61: 539-673. https://doi.org/10.2307/2395021

REID, C. & R. A. DYER. 1984. A Review of the southern African species of Cyrtanthus. American Plant Life Society, La Jolla.

RENDLE, A. B. 1901. The bulbiform seeds of certain Amaryllidaceae. J. Roy. Hort. Soc. 26: 89-96.

RØNSTED, N., D. ZUBOV, S. BRUUN-LUND & A. P DAVIS. 2013. Snowdrops falling slowly into place: An improved phylogeny for Galanthus (Amaryllidaceae). Mol. Phylogenet. Evol. 69: 205-217. https://doi.org/10.1016/j.ympev.2013.05.019

ROUX, J., M. ROSIKIEWICZ & M. ROBINSON‐RECHAVI. 2015. What to compare and how: comparative transcriptomics for evo‐devo. J. Exp. Zool. Part B: Mol. & Develop. Evol. 324: 372-382. https://doi.org/10.1002/jez.b.22618

RUDALL, P. J., R. M. BATEMAN, M. F. FAY & A. EASTMAN. 2002. Floral anatomy and systematics of Alliaceae with particular reference to Gilliesia, a presumed insect mimic with strongly zygomorphic flowers. Am. J. Bot. 89: 1867-1883. https://doi.org/10.3732/ajb.89.12.1867

SAIKI, R. K., D. H. GELFAND, S. STOFFEL, S. J. SCHARF, ... & H. A. ERLICH. 1988. Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science 239: 487-491. https://doi.org/10.1126/science.2448875

SAMOYLOV, A., M. KLAAS & P. HANELT. 1995. Use of chloroplast polymorphisms for the phylogenetic study of subgenera Amerallium and Bromatorrhiza (genus Allium). Fed. Rep. 106: 161-167. https://doi.org/10.1002/fedr.19951060306

SAMOYLOV, A., N. FRIESEN, S. POLLNER & P. HANELT. 1999. Use of chloroplast DNA polymorphisms for the phylogenetic study of Allium subgenus Amerallium and subgenus Bromatorrhiza (Alliaceae) II. Fed. Rep. 110: 103-109. https://doi.org/10.1002/fedr.19991100118

SADASIVAIAH, B. K. & S. KARUPPUSAMY. 2018. Two new species of Pancratium (Amaryllidaceae) from India. Species 19: 132-139.

SASIKALA, K. & M. KUMARI. 2013. Pancratium nairii (Amaryllidaceae)-a new species from Kerala, India. Indian J. For. 36: 543-544.

SARKER, D. DE, M. A. T. JOHNSON, A. REYNOLDS & P. E. BRANDHAM. 1997. Cytology of the highly polyploid disjunct species, Allium dregeanum (Alliaceae), and of some Eurasian relatives. Bot. J. Linn. Soc. 124: 361-373. https://doi.org/10.1111/j.1095-8339.1997.tb02002.x

SASSONE, A. B. & S. C. ARROYO-LEUENBERGER. 2018. Revisión taxonómica de las especies del género sudamericano Tristagma (Amaryllidaceae, Allioideae). Ann. Missouri Bot. Gard. 103: 163-174. https://doi.org/10.3417/2018069

SASSONE, A. B. & L. M. GIUSSANI. 2018. Reconstructing the phylogenetic history of the tribe Leucocoryneae (Allioideae): Reticulate evolution and diversification in South America. Mol. Phylogenet. Evol. 127: 437-448. https://doi.org/10.1016/j.ympev.2018.04.034

SASSONE, A. B., F. R. BLATTNER, L. M. GIUSSANI & D. H. HOJSGAARD. 2022. First glimpse on spring starflower domestication. Genes 13: 243. https://doi.org/10.1111/mec.16009

SASSONE, A. B., D. H. HOJSGAARD, L. GIUSSANI, J. BRASSAC & F. R. BLATTNER. 2021. Genomic, karyological and morphological changes of South American garlics (Ipheion) provide insights into mechanisms of speciation in the Pampean region. Mol. Ecol. 30: 3716-3729. https://doi.org/10.1111/mec.16009

SASSONE, A. B., A. LÓPEZ, D. H. HOJSGAARD & L. M. GIUSSANI. 2018. A novel indicator of karyotype evolution in the tribe Leucocoryneae (Allioideae, Amaryllidaceae). J. Plant Res. 131: 211-223. https://doi.org/10.1007/s10265-017-0987-4

SASSONE, A. B., L. M. GIUSSANI & E. R. GUAGLIANONE. 2013. Multivariate studies of Ipheion (Amaryllidaceae, Allioideae) and related genera. Plant Syst. Evol. 299: 1561-1575. https://doi.org/10.1007/s00606-013-0819-5

SNIJMAN, D. A. & A. W. MEEROW. 2010. Floral and macroecological evolution within Cyrtanthus (Amaryllidaceae): inferences from combined analyses of plastid ndhF and nrDNA ITS sequences. S. Afr. J. Bot. 76:217-238. https://doi.org/10.1016/j.sajb.2009.10.010

SNIJMAN, D. A. & H. P. LINDER. 1996. Phylogenetic relationships, seed characters, and dispersal system evolution in Amaryllideae (Amaryllidaceae). Ann. Missouri Bot. Gard. 83:362-386.

https://doi.org/10.2307/2399866

SNIJMAN, D. A. & R. H. ARCHER. 2003. Amaryllidaceae. In: GERMISHUIZEN, G. & N. L. MEYER (eds.), Plants of southern Africa: an annotated checklist (Strelitzia 14), pp. 957-967. National Botanical Institute. Pretoria.

SNIJMAN, D. A. & G. WILLIAMSON. 1994. A taxonomic re-assessment of Ammocharis herrei and Cybistetes longifolia (Amaryllideae: Amaryllidaceae). Bothalia 24: 127-132.

SNOEIJER, W. 2004. Agapanthus: a revision of the genus. Timber Press, Portland.

STAFFORD, G. I., M. J. WIKKELSØ, L. NANCKE, A. K. JÄGER, ... & N. RØNSTED. 2016. The first phylogenetic hypothesis for the southern African endemic genus Tulbaghia (Amaryllidaceae, Allioideae) based on plastid and nuclear DNA sequences. Bot. J. Linn. Soc. 181: 156-170. https://doi.org/10.1111/boj.12417

STERN, F. C. 1956. Snowdrops and snowflakes. A study of the genera Galanthus and Leucojum. The Royal Horticultural Society, London.

STRYDOM, A., R. KLEYNHANS & J. J. SPIES. 2007. Chromosome studies on African plants. 20. Karyotypes of some Cyrtanthus species. Bothalia 37: 103-108.

TRAUB, H. P. 1963. Genera of the Amaryllidaceae. American Plant Life Society, La Jolla.

TRAUB, H. P. & H. N. MOLDENKE. 1949. Amaryllidaceae: tribe Amarylleae. American Amaryllis Society, Stanford.

VOSA C. 2007. Prototulbaghia (Alliaceae), a new genus of the Alliaceae family from the Leolo mountains in Sekhukhuneland, South Africa. Caryologia 60: 273-278.

https://doi.org/10.1080/00087114.2007.10797948

VOSA C. G. 2009. An updated and illustrated taxonomic synopsis of the genus Tulbaghia (Alliaceae). Herbertia 63: 208-219.

WATERS, M. T., A. M. M. TILEY, E. M. KRAMER, A. W. MEEROW, … & R. W. SCOTLAND. 2013. The corona of the daffodil Narcissus bulbocodium shares stamen-like identity and is distinct from the orthodox floral whorls. Plant J. 74: 615-625. https://doi.org/10.1111/tpj.12150

WEBB, D. A. 1980. Narcissus L. In: TUTIN, T. G. et al. (eds.), Flora Europaea 5, pp. 78-84. Cambridge University Press, Cambridge.

WEICHHARDT-KULESSA, K., T. BÖRNER, J. SCHMITZ, U. MÜLLER-DOBLIES & D. MÜLLER-DOBLIES. 2000. Controversial taxonomy of Strumariinae (Amaryllidaceae) investigated by nuclear rDNA (ITS) sequences. Plant Syst. Evol. 223: 1-13. https://doi.org/10.1007/BF00985323

WEITEMIER, K., S. C. K. STRAUB, R. C. CRONN, M. FISHBEIN, … & A. LISTON. 2014. Hyb-Seq: combining target enrichment and genome skimming for plant phylogenomics. Appl. Plant Sci. 2: 1400042. http://doi.org/10.3732/apps.1400042.

WILDE DUYFJES, B. E. E. DE. 1976. A revision of the genus Allium L. (Liliaceae) in Africa. H. Veenman and Zonen B.V., Wageningen.

WILEY, E. O. 1981. Phylogenetics, the theory and practice of phylogenetic systematics. John Wiley and Sons, New York.

WILSENACH, R. 1963. A cytotaxonomic study of the genus Cyrtanthus. Cytologia 28: 170-180. https://doi.org/10.1508/cytologia.28.170

WING, S. L., F. HERRERA, C. A. JARAMILLO, C. GÓMEZ-NAVARRO, … & C. C. LABANDEIRA, 2009. Late Paleocene fossils from the Cerrejón Formation, Colombia, are the earliest record of Neotropical rainforest. Proc. Nat. Acad. Sci. 106: 18627-18632.

https://doi.org/10.1073/pnas.0905130106

XIE, D. F., J. B. TAN, Y. YU, L. J. GUI, … & X. J. HE. 2020. Insights into phylogeny, age and evolution of Allium (Amaryllidaceae) based on the whole plastome sequences. Ann. Bot. 125: 1039-1055. https://doi.org/10.1093/aob/mcaa024

ZHANG, F., N. WANG, G. CHENG, X. SHU, ... & Z. WANG. 2021. Comparative chloroplast genomes of four Lycoris species (Amaryllidaceae) provides new insight into interspecific relationship and phylogeny. Biology 10: 715. https://doi.org/10.3390/biology10080715

ZHANG, S. Y., H. T. WANG, Y. F. HU, W. ZHANG, … & J. W. SHAO. 2022. Lycoris insularis (Amaryllidaceae), a new species from eastern China revealed by morphological and molecular evidence. Phytokeys 206: 153-165. https://doi.org/10.3897/phytokeys.206.90720

ZÖLLNER, O. & L. ARRIAGADA. 1998. The tribe Gilliesieae (Alliaceae) in Chile. Herbertia 53: 104-107.

Downloads

Published

2023-07-28

Issue

Section

Special issue: Amaryllidaceae

How to Cite

“Classification and Phylogeny of Amaryllidaceae, the Modern Synthesis and the Road Ahead: A Review”. 2023. Boletín De La Sociedad Argentina De Botánica (Journal of the Argentine Botanical Society 58 (3). https://doi.org/10.31055/1851.2372.v58.n3.40046.

Similar Articles

41-50 of 159

You may also start an advanced similarity search for this article.